Your package manager will still see that the two packages want to own the same file and give you a conflict error unless you force install which it's very messy. Namespacing the commands would solve this.

But in general it is bad practice to package a bunch of unrelated tools together. You should be able to install them separately to only have what you need. Youd want different packages for each command or sets of related commands with common dependencies. And then have a meta package that includes all of your packages for people who want to install it all in one go.